2020

  1. Zhang L, Silva TC, Young JI, Gomez L, Schmidt MA, Hamilton-Nelson KL, Kunkle BW, Chen X, Martin ER, Wang L* (2020). Epigenome-wide meta-analysis of DNA methylation differences in prefrontal cortex implicates the immune processes in Alzheimer's disease. Nature Communications. 11, 6114 IF:12.12 
  2. Colaprico A*, Olsen C, Bailey MH, Odom GJ, Terkelsen T, Silva TC, Olsen AV, Cantini L, Zinovyev A, Barillot E, Noushmehr H, Bertoli G, Castiglioni I, Cava C, Bontempi G, Chen XS*, Papaleo E* (2020). Interpreting pathways to discover cancer driver genes with Moonlight. Nature Communications. 11(1):69. IF:12.12. 
  3. Odom GJ, Ban Y, Colaprico A, Liu L, Silva TC, Sun X, Pico AR, Zhang B, Wang L*, Chen X* (2020) pathwayPCA: an R package for integrative pathway analysis with modern PCA methodology and gene selection. Proteomics. 20(21-22):e1900409.  [IF: 3.106] 
  4. Wang P, Li X, Gao Y, Guo Q, Ning S, Zhang Y, Shang S, Wang J, Wang Y, Zhi H, Fang Y, Shen W, Zhang G*, Chen SX*, Li X*. LnCeVar: a comprehensive database of genomic variations that disturb ceRNA network regulation. Nucleic Acids Research. 2020;48(D1):D111-D7. IF:11.147
  5. Hsiung, A Moro, Y Ban, X Chen, AS Savio, R Hernandez, TR Malek (2020) Acute Lipopolysaccharide-Induced Inflammation Lowers IL-2R Signaling and the Proliferative Potential of Regulatory T Cells. ImmunoHorizons 2020, 4 (12) 809-824
  6. Chelsea A Isom, Erika Kristen Bisgaard, ..., Xi Chen, ..., Kyla P Terhune (2020) Does Intentional Support of Degree Programs in General Surgery Residency Affect Research Productivity or Pursuit of Academic Surgery? A Multi-Institutional Study. Journal of Surgical Education 77(6) e34-e38
  7. Michael A Gillette, ..., Antonio Colaprico, ..., Pushpa Hariharan, Rashna Madan, Ratna R Thangudu (2020) Proteogenomic characterization reveals therapeutic vulnerabilities in lung adenocarcinoma. Cell 182(1): 200-225
  8. Karsten Krug, Eric J Jaehnig, Shankha Satpathy, ..., Antonio Colaprico, ..., Xi Steven Chen, ..., Yingming Zhao, Heng Zhu, Lisa J Zimmerman (2020) Proteogenomic landscape of breast cancer tumorigenesis and targeted therapy. Cell 183(5):1436-1456.e31.
  9. Francesca Petralia, Nicole Tignor, Boris Reva, ..., Antonio Colaprico, ..., Xi S Chen, ..., Travis D Lorentzen, Wenke Liu, William E Bocik (2020). Integrated Proteogenomic Characterization across Major Histological Types of Pediatric Brain Cancer. Cell 183(7): 1962-1985 e1931.
  10. Dou Y, Kawaler EA, Cui Zhou D, ..., Colaprico A, Chen XS, ..., Zhang B, Liu T, Fenyo D, Clinical Proteomic Tumor Analysis C. Proteogenomic Characterization of Endometrial Carcinoma. Cell. 2020;180(4):729-48 e26
  11. Clark DJ, Dhanasekaran SM, Petralia F, ..., Colaprico A, ..., Chen XS, ..., Nesvizhskii AI, Wang P, Zhang H, Consortium CPTA. Integrated Proteogenomic Characterization of Clear Cell Renal Cell Carcinoma. Cell. 2019;179(4):964-83.e31. IF:36.216
  12. L Li, X Hu, JE Eid, AE Rosenberg, BA Wilky, Y Ban, X Sun, K Galoian, J DeSalvo, J Yue, XS Chen, M Blonska and JC Trent (2020) Mutant IDH1 Depletion Downregulates Integrins and Impairs Chondrosarcoma Growth. Cancers 12(1) 14
  13. Rajan SS, Amin AD, Li L, Rolland DC, Li H, Kwon D, Kweh MF, Arumov A, Roberts ER, Yan A, Basrur V, Elenitoba-Johnson KSJ, Chen XS, Puvvada SD, Lussier YA, Bilbao D, Lim MS, Schatz JH. The mechanism of cancer drug addiction in ALK-positive T-Cell lymphoma. Oncogene. 2020;39(10):2103-17.
  14. Jing Y, Chavez V, Khatwani N, Ban Y, Espejo AP, Chen X, Merchan JR. In vivo antitumor activity by dual stromal and tumor-targeted oncolytic measles viruses. Cancer Gene Therapy. 2020:1-13.
  15. Burgueno JF, Reich A, Hazime H, Quintero MA, Fernandez I, Fritsch J, Santander AM, Brito N, Damas OM, Deshpande A, Kerman DH, Zhang L, Gao Z, Ban Y, Wang L, Pignac-Kobinger J, Abreu MT (2020) Expression of SARS-CoV-2 Entry Molecules ACE2 and TMPRSS2 in the Gut of Patients With IBD. Inflammatory Bowel Diseases. 26(6):797-808 [IF: 4.005]
  16. Benatar M, Zhang L, Wang L, Granit V, Statland J, Barohn R, Swenson A, Ravits J, Jackson C, Burns TM, Trivedi J, Pioro EP, Caress J, Katz J, McCauley JL, Rademakers R, Malaspina A, Ostrow LW, Wuu J (2020) Validation of serum neurofilaments as prognostic and potential pharmacodynamic biomarkers for ALS. Neurology. 95(1):e59-e69 [IF: 8.320]